For questions about methodology and tools related to functional magnetic resonance imaging. For general questions about brain-structure use neurobiology, and for general imaging questions use neuroimaging.

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Using SPM Anatomy Toolbox [closed]

I am working on using time series similarity measures to find similar regions in brain using fmri data. However the Fmri data I have is for subject performing some actions. Currently I am choosing ...
4
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1answer
45 views

MRI images upside-down in FSLVIEW

I'm visualizing structural data in FSLVIEW, but the sagittal and coronal planes are both upside-down / not in the conventional orientation, i.e. rotated by 90º and 180º. I understand that this ...
3
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1answer
85 views

What are new and exciting research areas or applications in systems neuroscience? [closed]

Like the title says, what are new and exciting research areas or applications in systems neuroscience? I know the question is a broad one, so let me narrow it down a bit: I will get my master's ...
5
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2answers
119 views

Open fMRI data (or, collaborators)?

Are there any open fMRI datasets available on the internet? Experimental design doesn't matter much, since I would be working towards a new data analysis method. If the distributed data has been ...
9
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2answers
246 views

What are different ways to determine centroids of fMRI activation, their drawbacks and perks?

I'm reading an older article on bilingualism (Kim, Relkin, Lee, & Hirsch, 1997) for a seminar. They were interested in the spatial separation of two languages in early and late bilinguals. They ...
9
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2answers
440 views

Plotting publication-quality ball-and-stick models of brain connectivity in 3D

I'm working on brain imaging (fMRI) and I'm looking for a way to plot brain effective connectivity (dynamic causal modeling) parameters between different brain regions in a 3D plot. The plotting ...
5
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1answer
61 views

Is there any fMRI evidence for different “states of mind”?

If you've seen a snickers commercial, it goes something like "you are a different person when you are hungry". I'm interested if the person's brain actually looks different when observed through fMRI ...
4
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1answer
42 views

Is it reasonable to have a factor with only two levels in a carry-over design for an fMRI study?

I'm planning a carry-over design for an fMRI study. To save time, since it seems that I'll need a huge number of trials for my purpose, I'm wondering if it's reasonable to have a matrix 2x3x3, ...