For questions about modeling processes from cognitive and neurobiological theories via algorithms and computer simulations, and also about confirming experimental results with theoretical/statistical constructs.

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3answers
57 views

What do the weights of an artificial neural network represent in biological neurons?

In artificial neural networks the connections between neurons are a assigned numbers called "weights" or "parameters". As new data is fed into the neural net, these weights change. This is how the ...
3
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2answers
88 views

What is the role of Chloride (Cl- ions) in membrane potential?

This Membrane Potential article mentions only that Cl- ion is used to model inhibitory GABA synapses. Does it have another role besides hyper-polarizing the cell due to inhibitory neurotransmitter ...
1
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1answer
46 views

Unified Theory of the Human Brain [closed]

I'm a junior researcher(Life Sciences undergraduate) starting out in computational genetics of neuroscience, and I want to create a Unified Theory/Computational Model of the human brain and all its ...
1
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1answer
11 views

In NEURON simulator, how do you pan and zoom a plotted graph?

How do I zoom in and move around a chart after it has been plotted?
1
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1answer
25 views

In NEURON simulator, how can I save the values of a graph to a file?

In NEURON simulator, suppose I graph the value of a variable (i.e. soma.v(0.5)) over time. How do I save the values in the graph to a file?
2
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1answer
52 views

In NEURON simulator, what is the command for “Init & Run” button?

Sometimes other windows obscure the UI, and I would like to type in the command from the NEURON console.
5
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0answers
17 views

What is “Predictive Reverse Engineering” and how can it be used for understanding brain structure?

Here is a quotation from the paper Markram et al., Introducing the Human Brain Project : New informatics and modeling approaches are making it possible to reverse engineer the detailed structure ...
3
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1answer
104 views

Are there working computational frameworks for human behavior and personality?

I've been scanning through the web, looking for some ideas and theories about computational modules of human behavior and personality, but so far all I could find regards to procedural programs and ...
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0answers
39 views

Is it necessary to read signals and systems before statistical signal processing/ detection theory [closed]

For one who is interested in computational neuroscience and brain computer interface, in university curriculum (e.g. BCCN Berlin), it requires a course in statistical signal processing / signal ...
6
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1answer
96 views

What are the practical uses of ontologies?

I have read many papers and books about ontologies, and I am trying to figure out that how they are used in a real project. For example, how can the ontology for a soccer player robot can be defined ...
2
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1answer
32 views

Can information theory be applied to human interactions and communication?

I am not sure if this question is better suited for the computational science SE. I learned a bit of Shannon's information theory in a course I took last year. In the class it was defined as the ...
7
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2answers
63 views

Biologically plausible cognitive model of Wisconsin card sorting task

As discussed previously, there are a wide range of models that have been applied to the Wisconsin card sorting task. However, which one is most biologically plausible? That is, uses a realistic model ...
10
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2answers
134 views

How is the biological accuracy of ANNs typically measured?

I am referring to the computational neuroscience side of neural network research that focuses on biological accuracy. I've read references to improving biological realism (using say spiking neurons ...
2
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0answers
40 views

Research on computational models of physiological mechanisms in affective neuroscience at a biochemical level

As computational neuroscience has the mainstream on single neuron/network modelling for biochemical aspect, and computational modelling of physiological mechanism of hippocampus for analytic study of ...
1
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1answer
114 views

How to compare brain waves?

I'm a Java developer completely naive of brain waves and such. Could anyone tell me how to compare them? For instance, how can I compare: and this: What fields of study should I focus on? I ...
3
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2answers
34 views

What aspects of ACT-R are not contained within Spaun?

ACT-R was the first big cognitive model and excels at modelling human behavioral data quite accurately. Spaun, which is the world's largest functional brain model, took a lot of ACT-R's insights and ...
2
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0answers
16 views

What is the most unified functional model of the hippocampus?

There are many different incremental models of the hippocampus and it's role in learning as shown by a quick search. However, have there been any efforts to combine these various models into a single ...
2
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1answer
13 views

How is memory accounted for in the NEF?

The Neurological Engineering Framework can be used to create systems that use memory in interesting ways. One system (Spaun) is able to memorize (and forget) lists much in the same way as humans do. ...
3
votes
1answer
17 views

How well are neurotransmitters used in SPA?

How much does the SPAUN and the Semantic Pointer Architecture (SPA) that was used to build it take neurotransmitters into account? In the book How to Build a Brain, various inhibitory and excitatory ...
3
votes
1answer
18 views

How well does the NEF capture neuronal heterogeneity?

From what I understand of the Neurogical Engineering Framework (NEF), groups of neurons are used to compute functions. However, I'm not clear if these calculations take into account neurons of ...
2
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1answer
39 views

Determining the position of the calcium ion in the three dimensional space

Is it possible to determine the position of a single calcium ion or its population in the context of a three dimensional space with relatively good time frequency, say 1 Hz, taking into account ...
4
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0answers
32 views

What's the relation between BCM and Oja's learning rule?

A software I'm using has implemented two unsupervised learning algorithms, Oja's and Bienenstock, Cooper, Munro's (BCM) learning rule. I understand that they are two very different algorithms for ...
3
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0answers
58 views

Neuropharmacology and Simulation [closed]

I've been wondering whether neural simulations have had applications in (cognitive)neuropharmacological research already. One always reads about the promise of the technology in helping us cure ...
8
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1answer
119 views

Spiking Neural Network Simulation: Measuring and Classifying Bump Attractor States

I am currently working with Spiking Neural Networks and multi-(meta)-stable attractor states. What I observe in my simulations are 'bump' attractors that appear, disappear, and may wander around. ...
3
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1answer
57 views

How does the frequency of a visual stimulus affect the steady-state visually evoked potential?

I want to make a project for EEG signal processing, and in my research I found the concept of SSVEP, which means that if you have a stimulus with low frequency applied to the eye, the electrical ...
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1answer
51 views

Prerequisite Request: Neurorobotics [closed]

For the newly emerging field, Neurorobotics. Can one list several highly recommended prerequisite courses prior to entering this field ? Except for classical machine learning, computational ...
3
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1answer
34 views

How does hPES compare to the learning rates of ANNs?

The primary learning mechanism of artificial neural networks (ANN) is back-propagation, which is not biologically plausible. Trevor Berkolay created an alternative to this learning with the ...
9
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1answer
113 views

Importance of Neural Synchrony to Cognition

Is there a consensus on whether computation using Neural Synchrony is reasonable or not? In "How to Build a Brain", Chris Eliasmisth cites Yuko Munakata and R. C. O'Reilly as saying that "the ...
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2answers
56 views

Knowledge in what fields is necessary to develop an EEG brain-computer interface?

I am a computer science student, and as part of my project, I would like to develop a system that changes the TV channel, increases its volume, etc. by just the thought of it. My primary investigation ...
2
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1answer
134 views

Is EEG brain-computer interface reliable?

I am a computer science student [assume I have very little knowledge of the biological part of EEG]. I recently came across the topic EEG and was pretty interested in it. As far as I know, we get an ...
4
votes
0answers
123 views

For binary (spike train) signals, take FFT of signal or autocorrelation of signal?

I want to characterize a binary time-series signal x (derived from neuron action potential data) in the frequency domain. Should I use the FFT of the original signal x, or the power spectrum (FFT of ...
10
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2answers
238 views

How distantly related are research in computational neuroscience and neural networks/machine learning?

If one is more interested in understanding how algorithms in the biological brain solve problems (theoretically, particularly the mathematical aspect), and possibly in building brain-inspired ...
8
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4answers
404 views

How to read a neuron tuning curve graph?

I'm working through the tutorial of section 2.4 of "How to Build a Brain" and I've encountered this graph of a neuron tuning curve. I understand the Y axis is the firing rate of the neuron, that ...
7
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2answers
70 views

Criteria for evaluating cognitive systems

In the first chapter of the book "How to Build a Brain", Chris Eliasmith quickly establishes some criteria which he will use to evaluate Spaun, the cognitive system described in the book. He describes ...
2
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0answers
17 views

How to compare tasks completed by neural architectures objectively?

When I first saw this video of Spaun and the tasks it can complete (solving the Towers of Hanoi problem, completing the Raven matrices), I was really impressed, but then I realized I didn't really ...
6
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1answer
40 views

What are the common components of other cognitive architectures and the Semantic Pointer Architecture

In the papers I've read about it, the Semantic Pointer Architecture (SPA) embodied in Spaun is said to be more biologically plausible than many other proposed architectures such as the Neural ...
3
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1answer
70 views

Relation between Nengo, SPA and NEF with respect to other Neural Models

I'm working through How to Build a Brain and I keep getting confused on the relation between Nengo, the Semantic Pointer Architecture (SPA) and the Neurological Engineering Framework (NEF). Are there ...
4
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1answer
320 views

What is the difference between computational neuroscience, theoretical neuroscience, and neuroinformatics (if there is one)?

In particular, theoretical and computational neuroscience seem to be synonymous with each other. Neuroinformatics at least seems to deal somewhat more with solving things numerically and the usage and ...
1
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1answer
63 views

Overview of Pitts & McCullough (1943) “A logical calculus of the ideas immanent in nervous activity”

Is there a good tutorial or simplified overview of the paper, 'Logical calculus for nervous activity' (McCullough & Pitts, 1943)? Reference McCullough, W. S., & Pitts, W. (1943). A logical ...
5
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1answer
53 views

Are there any agent based cognitive models that are inspired by complex systems studies of ant colonies and economies?

I think that certain aspects of ant colony behavior seem almost like economic decision-making in behavior. There are also links between ant colony optimization and features of the brain like selective ...
8
votes
4answers
693 views

What are the mathematical models of memory?

Are there mathematical models of memory in humans or animals? I want to know how neuroscientists use mathematics to describe memory in living creatures. How do neuroscientists model memory and show ...
1
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1answer
43 views

Why do I get smaller accuracy when I use 80% of training sets using HMAX model?

I am trying to compute the accuracy of the HMAX model. I am using the Face category (containing 435 images) from the Caltech101 database. I split it into $x$ ...
6
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1answer
199 views

Cosyne vs CNS conferences for Computational Neuroscience?

While Googling, I noticed there are 2 conferences for computational neuroscience: Cosyne and CNS. My questions are: 1) What are these conferences' differences in terms of material & impact/size? ...
6
votes
2answers
109 views

What is the difference between spike-triggered averaging and reverse correlation?

I'm interested in the difference between spike-triggered averaging and reverse correlation. In some papers (i.e., Schwartz, Odelia, et al) I see the term 'Spike Triggered Averaging'. In others, (ie ...
5
votes
1answer
175 views

Computational model of biological object recognition

The human brain can achieve a remarkable ability to recognize visual patterns in an Invariant, selective and fast manner. The human visual system is quite powerful. It has an exquisite selectivity ...
12
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1answer
213 views

How does the brain calculate velocity?

How does the human brain calculate velocities? For example, when crossing a road and seeing a car coming towards you, how does the brain actually compute the rough velocity of the vehicle and your own ...
6
votes
3answers
154 views

How does the brain compute sound localisation without the equations?

What sort of computations are used for localising sound with the ears, and how does the brain compute the time difference between sounds reaching each ear? I am interested in the specific mechanisms ...
7
votes
1answer
61 views

What are biologically plausible ways to model binocular disparity?

I figure there is a vast body of literature on stereovision, both neurophysiological and computational studies. Computer Vision also provides some algorithmic insight on implementing binocular ...
4
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0answers
223 views

Is “Biophysics of Computation” still a good book?

To begin with, I hope this is the right place to ask - if not, please don't be too mad about it :) Currently I'm studying mathematics (2nd year) and I think I'm pretty into neuroscience. To "test" ...
5
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1answer
83 views

How can one estimate the excitability or mood of general public on a specific day?

I'm interested if there are publicly available tools or resources that can be used to gauge the overall activity/excitability or mood of general public for a specific day. For example, yesterday I ...